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  1. Renaud, P.E.; Belgrano, A.; Dupont, S.; Boyd, P.W.; Collins, S.; Blenckner, T.; Drexler, M.; Hall-Spencer, J.M.; Robinson, C.; Weber, C.T.; Vargas, C.A. (2024) Devoloping capacity for transdisciplinary studies of changing ocean systems. Oceanography. https://doi.org/10.5670/oceanog.2025.113
  2. Castillo, N.; Gaitán-Espitia, J.D.; Quintero-Galvis, J.F.; Saldías, G.S.; Martel, S.I.; Lardies, M.A.; Mesas, A.; Péres-Santos, I.E.; Gelcich, S.; Vargas, C.A. (2024) Small-scale geographic differences in multiple-driver environmental variability can modulate contrasting phenotypic plasticity despite high leves of gene flow. Science of the Total Environment 954, 176772. https://doi.org/10.1016/j.scitotenv.2024.176772
  3. Conejeros, A.; San Martin V.A.; Castillo, N.; Cuevas, L.A.; Garcés, K.; Barra, R.O.; Aguilera, V.M.; Vargas, C.A. (2024) Interactive impact of residual pyrethroid compounds used in the Chilean salmon farming industry and coastal acidification conditions on the feeding performance of farmed mussels in northern Patagonia. Marine Environmental Research 202: 106727. https://doi.org/10.1016/j.marenvres.2024.106727
  4. Cantarero, S.I.; Flores, E.; Allbrook, H.; Aguayo, P.; Vargas, C.A.; Tamanaha, J.E.; Scholz, J.B.C.; Bach, L.T.; Löscher, C.R.; Riebesell, U.; Rajagopalan, B.; Dildar, N.; Sepúlveda, J. (2004) Lipids remodeling in phytoplankton exposed to multi-environmental drivers in a mesocosm experiment. Biogeoscience 21(12): 3927-3958. https://doi.org/10.5194/bg-21-3927-2024
  5. Curra, E.D.; Valerio, A.; Lara, C; García-Tuñon, W.; Broitman, B.R.; Saldías, G.S.; Nimptsch, J.; Vargas, C.A. (2024) CDOM dynamics in two coastal zones influenced by contrasting land uses in northern Patagonia. Estuarine, Coastal and Shelf Science 306: 108897. https://doi.org/10.1016/j.ecss.2024.108897
  6. Vargas, C.A.; Gelcich, S. (2024) Integrated actions across multiple sustainable development goals (SDGs) can help address coastal ocean acidification. Communications Earth & Environment 5: 319. https://doi.org/10.1038/s43247-024-01485-6
  7. Mesas, A.; Aguilera, V.M.; González, C.E.; Giesecke, R.; Escribano, R.; Vargas. C.A. (2024) Molecular evidence for a new endemic species of Acartia (Copepoda, Calanoida) from Southeast Pacific coast. Scientific Report 14: 12366. https://doi.org/10.1038/s41598-024-62080-5
  8. Lubchenco, J.; Camp, E.F.; Vargas, C.A.; Belhabib D.; Anna, Z.; Amon D.J.; Metaxas A.; Harden-Davies H. (2023) Priorities for progress towards sustainable development Goal 14 ‘Life below water’. Nature Ecology & Evolution 7, 1564 – 1569. https://doi.org/10.1038/s41559-023-02208-4
  9. Barceló, M.; Vargas, C.A.; Gelcich, S. (2023) Land-sea interactions and ecosystem services. Research gaps and future challengues. Sustaintability 15 (10). https://doi.org/10.3390/su15108068
  10. Wong, J.C.; Raven, J.A.; Aldunate, M.; Silva, S.; Gaitán-Espita, J.D.; Vargas, C.A.; Ulloa, O.; von Dassow, P. (2023) Do phytoplankton require oxygen to survive? A hypothesis and model synthesis from oxygen minimum zones. Limnology and Oceanography 68 (7): 1417-1437. https://doi.org/10.1002/lno.1236
  11. Benítez, S.; Figueroa, A.; Lagos, N.A.; Silva, A.X.; Duarte, C.; Vargas, C.A.; Lardies, M.A.; Cárdenas, L. (2023) Differential gene expression analysis in the scallop Argopecten purpuratus exposed to altered pH and temperature conditions in an upwelling-influenced farming area. Comparative biochemistry and physiology Part D: Genomics and Proteomics 45: 101046. https://doi.org/10.1016/j.cbd.2022.101046
  12. Rojas, C.M.; Saldías, G.S; Flores, R.P.; Vásquez, S.I.; Salas, C.; Vargas, C.A. (2023) A modeling study of hydrographic and flow variability along the river-influenced coastal ocean off central Chile. Ocean Modelling 181 102155. https://doi.org/10.1016/j.ocemod.2022.102155
  13. Baldanzi, S.; Saldías, G.S.; Vargas, C.A.; Porri, F. (2022) Long term environmental variability modulates the epigenetics of maternal traits of kelp crabs in the coast of Chile. Scientific Report 12: 18806. https://doi.org/10.1038/s41598-022-23165-1
  14. Piscoya, E.; von Dassow, P.; Aldunate, M.; Vargas, C.A. (2022) Physical-chemical factors influencing the vertical distribution of phototrophic pico-nanoplankton in the Oxygen Minimum Zone (OMZ) off Northern Chile: The relative influence of low pH/low O2 conditions. Marine Environmental Research 180: 105710. https://doi.org/10.1016/j.marenvres.2022.105710
  15. Aldunate, M.; von Dassow, P.; Vargas, C.A.; Ulloa, O. (2022) Carbon assimilation by the picoplankton community inhabiting the secondary chlorophyll maximum of the anoxic marine zones of the eastern tropical north and south Pacific. Frontiers in Marine Science 9: 858308. https://doi.org/10.3389/fmars.2022.850308
  16. Vargas, C.A.; Cuevas, L.A.; Broitman, B.R.; San Martín, V.A.; Lagos, N.A.; Gaitán-Espitia, J.D.; Dupont, S. (2022) Upper environmental pCO2 drives sensitivity to ocean acidification in marine invertebrates. Nature Climate Change 12, 200-207. https://doi.org/10.1038/s41558-021-01269-2
  17. Reyes-Macaya, D.; Hoogakker, B.; Martínez-Méndez, G.; Llanillo, P.J.; Grasse, P.; Mohtadi, M.; Mix, A.; Leng, M.J.; Struck, U.; McCorkle, D.C.; Troncoso, M.; Gayo, E.M.; Lange, C.B.; Farias, L.; Carhuapoma, W.; Graco, M.; Cornejo-D’Ottone, M.; De Pol Holtz, R.; Fernandez, C.; Narvaez, D.; Vargas, C.A.; García-Araya, F.; Hebbeln, D. (2022) Isotopic characterization of water masses in the Southeast Pacific Region: Paleoceanographic implications. Journal of Geophysical Research: Oceans 127 e2021JC017525. https://doi.org/10.1029/2021JC017525
  18. Osma N.; Vargas, C.A.; Algueró-Muñíz, M.; Bach, L.T.; Gómez, M.; Horn, H.G.; Ludwig, A.; Packard, T.T.; Riebesell, U.; Romero-Kutzner, V.; Taucher, J.; Fernández-Urruzola, I. (2022) Ocean acidification induces distinct metabolic responses in subtropical zooplankton under oligotrophic conditions and after simulated upwelling. Science of the Total Environment 810. http://dx.doi.org/10.1016/j.scitotenv.2021.152252
  19. Curra-Sánchez, E.D.; Lara, C.; Cornejo-D’Ottone, M.; Nimptsch, J.; Aguayo, M.; Broitman, B.R.; Saldías, G.S.; Vargas, C.A. (2022) Contrasting land-uses in two small river basins impact colored dissolved organic matter concentration and carbonate system along a river-coastal ocean continuum. Science of the Total Environment 806. https://doi.org/10.1016/j.scitotenv.2021.150435
  20. Lagos, N.A.; Benítez, S.; Grenier, C.; Rodriguez-Navarro, A.B.; García-Herrera, C.; Abarca-Ortega, A.; Vivanco, J.F.; Benjumeda, I.; Vargas, C.A.; Duarte, C.; Lardies, M.A. (2021) Plasticity in organic composition maintains biomechanical performance in shell of juvenile scallops exposed to altered temperature and pH conditions. Nature Scientific Reports 11: 24201 https://doi.org/10.1038/s41598-021-03532-0
  21. Vargas, C.A.; Cantarero, S.I.; Sepúlveda, J.; Galán, A.; De Pol-Holz, R.; Walker, B.; Schneider, W.; Farías, L.; Cornejo D’Ottone, M.; Walker, J.; Xu, X.; Salisbury, J. (2021) A source of isotopically light organic carbon in a low-pH anoxic marine zone. Nature communications 12, 1604. https://www.nature.com/articles/s41467-021-21871-4
  22. Ramajo, L.; Osores, S.J.; Lagos, N.A.; Broitman, B.R.; Navarro, J.M.; Vargas, C.A.; Manríquez, P.H.; Lardies, M.A. (2021) Estuarine condiciotns more than pH modulate the physiological flexibility of mussel Perumytilus purpuratus population. Estuarine, Coastal and Shelf Science 249. https://doi.org/10.1016/j.ecss.2020.107098
  23. Jahnsen-Guzmán, N.; Lagos, N.A.; Lardies, M.A.; Vargas, C.A.; Fernández, C.; San Martín, V.A.; Saavedra, L.M.; Cuevas, L.A.; Quijón, P.A.; Duarte, C. (2021) Environmental refuges increase performance of juvenile mussels Mytilus chilensis: Implications for mussel seedling and farming strategies. Science of the Total Environment 751. https://doi.org/10.1016/j.scitotenv.2020.141723
  24. Aguayo, P.; Campos, V.L.; Henríquez, C.; Olivares, F.; De la Iglesia, R.; Ulloa, O.; Vargas, C.A. (2020) The influence of pCO2-driven ocean acidification on the open ocean bacterial community during a short-term microcosm experiment in the Eastern Tropical South Pacific (ETSO) off Northern Chile. Microorganisms 8 (12), 1924. https://doi.org/10.3390/microorganisms8121924
  25. Aguilera, V.M. Vargas, C.A.; Dewitte, B. (2020) Intraseasonal Hydrographic Variations and Nearshore Carbonates System Off Northern Chile During the 2015 El Niño Event. Journal of Geophysical Research: Biogeoscience 125 (11). https://doi.org/10.1029/2020JG005704
  26. Riquelme-Bugeño, R.; Pérez-Santos, I.; Alegría, N.; Vargas, C.A.; Urbina, M.A. & Escribano, R. (2020)  Diel vertical migration into anoxic and high pCO2 waters: Acoustic and net based krill observations in the Humboldt Current System. Nature Scientific Reports. 10,17181. https://doi.org/10.1038/s41598-020-73702-z
  27. Cantarero, S.I.; Henríquez_Castillo; Tildar, N.; Vargas, C.A.; Von Dassow, P.; Cornejo-D’Ottone, M. & Sepúlveda, J. (2020) Size-fractioned contribution of microbial biomass to suspended organic matter in the Eastern Tropical South Pacific oxygen minimum zone. Frontiers in Marine Science. doi: 10.3389/fmars.2020.540643
  28. Saavedra, L.M.; Saldías, G.S.; Broitman, B.R.; Vargas,C.A. (2020) Carbonate Chemistry Dynamics in Shellfish Farming Areas along the Chilean coast: Natural Ranges and Biological implications. ICES Journal of Marine Sciences. https://doi.org/10.1093/icesjms/fsaa127
  29. Vargas, C.A.; Garreaud, R.; Barra, R.; Vásquez-Lavín, F.; Saldías, G.S.; Parra O. (2020) Environmental costs of water transfers. Nature Sustaintability 4, https://doi.org/10.1038/s41893-020-0526-5
  30. Aguilera, V.M.; Dam, H.; Vargas, C.A. (2020) Antagonistic interplay between pH and food resources affects copepod traits and performance in a year-round upwelling system. Nature Scientific Reports 10, 62. https://doi.org/10.1038/s41598-019-56621-6
  31. Osma, N.; Latorre, L.; Jacob, B.; Contreras, P.Y.; Von Dassow, P.; Vargas, C.A. (2020) Response of phytoplankton assemblages from naturally acidic coastal ecosystems to ocean acidification. Frontiers in Marine Science 7, 323. https://doi.org/10.3389/fmars.2020.00323
  32. Vergara-Jara, M.J.; DeGrandpre, M.D.; Torres, R.; Beatty, C.M.; Cuevas, L.A.; Alarcón, E.; Iriarte, J.L. (2019) Seasonal changes in carbonate saturation state and air-sea CO2 fluxes during an annual cycle in a stratified-temperate fjord (Reloncaví Fjord, Chilean Patagonia). Journal of Geophysical Research: Biogeosciences 124 (9): 2851-2865. https://doi.org/10.1029/2019JG005028
  33. Cuevas, L.A.; Tapia, F.J.; Iriarte, J.L.; González, H.E.; Silva, N.; Vargas, C.A. (2019) Interplay between freshwater discharge and oceanic waters modulates phytoplankton size-structure in fjords and channel systems of the Chilean Patagonia. Progress in Oceanography 173: 103-113. https://doi.org/10.1016/j.pocean.2019.02.012
  34. Aguilera, V.M.; Escribano, R.; Vargas, C.A.; González, M.T. (2019) Upwelling modulation of functional traits of a dominant planktonic grazer during “warm-acid” El Niño 2015 in a year-round upwelling area of Humboldt Current. PLoS ONE 14 (1): e0209823. https://doi.org/10.1371/journal. pone.0209823
  35. Yevenes, M.A.; Lagos, N.A.; Farías, L.; Vargas, C.A. (2019) Greenhouse gases, nutrients and the carbonate system in the Reloncaví Fjord (Northern Chilean Patagonia): Implications on aquaculture of the mussel, Mytilus chilensis, during an episodic volcanic eruption. Science of the Total Environment 669: 49–61. https://doi.org/10.1016/j.scitotenv.2019.03.037
  36. Ponce, R.D.; Vasquez-Lavín, F.; San Martin, V.A.; Hernández, J.I.; Vargas, C.A.; Gonzalez, P.S.; Gelcich, S. (2019) Ocean Acidification, Consumers’s Preferences, and Market Adaptation Strategies in the Mussel Aquaculture Industry. Ecological Economics 158: 42-50. https://doi.org/10.1016/j.ecolecon.2018.12.011
  37. Narváez, D.A.; Vargas, C.A.; Cuevas, L.A.; García-Loyola, S.A.; Lara, C.; Segura, C.; Tapia, F.J.; Broitman, B.R. (2019) Dominant scales of subtitdal variability in coastal hydrography of the Northern Chilean Patagonia. Journal of Marine Systems 193: 59 – 73. https://doi.org/10.1016/j.jmarsys.2018.12.008
  38. San Martín, V.; Gelcich, S.; Vásquez-Lavin, F.; Ponce, R.D.; Hernández, J.I.; Lagos, N.A.; Birchenough, S.N.R.; Vargas, C.A. (2019) Linking social preferences and ocean acidification impacts in mussel aquaculture. Nature Scientific Reports 9: 4719. https://doi.org/10.1038/s41598-019-41104-5
  39. Vargas, C.A.; Cuevas, L.A.; Silva, N.; González, H.E.; De Pol-Holz, R.; Narváez, D.A. (2018) Influence of glacier melting and river discharges on the nutrient distribution and DIC recycling in the Southern Chilean Patagonia. Journal of Biogeochemical Research, Biogeosciences 123, 256–270. https://doi.org/10.1002/2017JG003907
  40. Saavedra, L.M.; Parra, D.; San Martín, V.; Lagos, N.A.; Vargas, C.A. (2018) Local habitat influences on feeding and metabolic performance upon high pCO2 levels of the intertidal mussels Perumytilius purpuratus. Estuaries and Coasts 41(4): 1118 – 1129. https://doi.org/10.1007/s12237-017-0333-z
  41. Duarte, C.; Navarro, J. Quijón, P.; Loncon, D.; Torres, R.; Manríquez, P.H.R.; Lardies M.A.; Vargas, C.A.; Lagos, N.A. (2018) The energetic physiology of juvenile mussels, Mytilus chilensis (Hupe): the prevalent role of salinity under current and predicted pCO2scenarios. Environmental Pollution 242(A): 156 – 163. https://doi.org/10.1016/j.envpol.2018.06.053
  42. Díaz R.; Lardies, M.A.; Tapia, F.J.; Tarifeño, E.; Vargas, C.A. (2018) Transgenerational effects of pCO2-driven ocean acidification on adult mussels Mytilus chilensis modulate physiological response to multiple stressors in offspring larvae. Frontiers in Physiology 9: 1349. https://doi.org/10.3389/fphys.2018.01349
  43. Iriarte, J.L.; Cuevas, L.A.; Cornejo, F. Silva, N.; González, H.E.; Castro, L.; Montero, P.; Vargas, C.A.; Daneri, G. (2018) Low spring primary production and microplankton carbon biomass in Sub-Antarctic Patagonian channels and fjords (50-53ºS). Artic, Antarctic, and Alpine Research 50(1): e1525186. https://doi.org/10.1080/15230430.2018.1525186
  44. Osores, S.J.A.; Lagos, N.A.; San Martin, V.; Manríquez, P.H.; Vargas, C.A.; Torres, R.; Navarro, J.M.; Poupin, M.J.; Saldías, G.S.; Lardies, M. (2017) Plasticity and inter-population variability in physiological and life-history traits of the mussel Mytilus chilensis: A reciprocal transplant experiment. Journal of Experimental Marine Biology & Ecology 490: 1–12. https://doi.org/10.1016/j.jembe.2017.02.005
  45. Jacob, B.G.; Von Dassow, P.; Salisbury, J.E.; Navarro, J.M.; Vargas, C.A. (2017) Impact of low pH/high pCO2 on the physiological response and fatty acid content in diatom Skeletonema pseudocostatum. Journal of The Marine Biological Association of United Kingdom, 97(1): 125 – 133. https://doi.org/10.1017/S0025315416001570
  46. Vargas, C.A.; Lagos, N.A.; Lardies, M.A.; Duarte, C.; Manríquez, P.H.; Aguilera, V.M.; Broitman, B.; Widdicombe, S.; Dupont S. (2017) Species-specific response to ocean acidification is a consequence of local adaptation and adaptive plasticity. Nature Ecology & Evolution. 1, 0084. https://doi.org/10.1038/s41559-017-0084
  47. Broitman, B.; Halpern B.S.; Gelcich, S.; Lardies, M.A.; Vargas, C.A. Vásquez-Lavin, F.; Widdicombe, S. & Birchenough, S.N.R. (2017) Dynamic interactions among boundaries and the expansion of sustainable aquaculture. Frontiers in Marine Science 4. Article 15. https://doi.org/10.3389/fmars.2017.00015
  48. Benítez, S.; Duarte, C.; Opitz, T.; Lagos, N.A.; Pulgar, J.M. Vargas, C.A.; Lardies, M.A. (2017) Intertidal pool fish Girella laevifrons(Kyphosidae) shown strong physiological homeostasis but shy personality: The cost of living in hypercapnic habitats. Marine Pollution Bulletin 18: 57 – 63. https://doi.org/10.1016/j.marpolbul.2017.02.011
  49. Lardies, M.A.; Benitez, S.; Osores, S.; Vargas, C.A.; Duarte, C.; Lohrmann, K.; Lagos, N. (2017) Physiological and histopathological impacts of increased carbon dioxide and temperature on the scallops Argopecten purpuratus cultured under upwelling influences in northern Chile. Aquaculture 479: 455 – 466. https://doi.org/10.1016/j.aquaculture.2017.06.008
  50. Castillo, N.; Saavedra, L.M.; Vargas, C.A.; Gallardo_Escárate, C.; Détrée, C. 2017. Ocean acidification and pathogen exposure modulate the immune response of the edible mussel Mytilus chilensis. Fish and Shellfish Immunology. 70: 149 – 155. https://doi.org/10.1016/j.fsi.2017.08.047
  51. Aguilera, V.; Vargas, C.A.; Lardies, M.A. & Poupin, M.J. (2016) Adaptive variability to low-pH river discharges in Acartia tonsa and stress responses to high pCO2 conditions. Marine Ecology 37: 215 – 226. https://doi.org/10.1111/maec.12282
  52. Ramajo, L.; Marbà, N.; Prado, L.; Peron, S.; Lardies, M.; Rodríguez-Navarro, A.; Vargas, C.A.; Lagos, N.; & Duarte, C. (2016) Biomineralization changes with food supply confer juvenile scallops (Argopecten purpuratus) resistance to ocean acidification. Global Change Biology, 22: 2025 – 2037. https://doi.org/10.1111/gcb.13179
  53. Pérez, C.A.; Lagos, N.A.; Saldías, G.S.; Waldbusser, G.; & Vargas, C.A. (2016) Riverine discharges impact physiological traits and carbon sources for shell carbonate in the marine intertidal mussel Perumytilius purpuratus. Limnology & Oceanography 61: 969 – 983. https://doi.org/10.1002/lno.10265
  54. Vargas, C.A.; Contreras, P.Y.; Pérez, C.A.; Sobarzo, M.; Saldías, G.S.; & Salisbury, J. (2016) Influences of riverine and upwelling waters on the coastal carbonate system off Central Chile, and their ocean acidification implications. Journal of Geophysical Research, Biogeosciences. 121: 1468-1483. https://doi.org/10.1002/2015JG003213
  55. Navarro, J.M.; Duarte, C.; Manríquez, P.H.; Lardies, M.A.; Torres, R.; Acuña, K.; Vargas, C.A.; Lagos, N.A. (2016) Ocean warming and elevated carbon dioxide: multiple stressor impacts on juvenile mussels from southern Chile. ICES Journal of Marine Science 73(3): 764 – 771. https://doi.org/10.1093/icesjms/fsv249
  56. Lagos, N.A.; Benítez, S.; Duarte, C.; Lardies, M.A.; Broitman, B.R.; Tapia, C.; Tapia, P.; Widdicombe, S.; Vargas, C.A. (2016) Effects of temperature and ocean acidification on shell characteristics of Argopecten purpuratus: implications for scallop aquaculture in an upwelling-induced area. Aquaculture Environment Interactions, 8: 357 – 370. https://doi.org/10.3354/aei00183
  57. Saldías, G.S.; Largier, J.L.; Mendes, R.; Pérez_Santos, I.; Vargas, C.A.; Sobarzo, M. (2016) Satellite-measured interannual variability of turbid river plumes off central-southern Chile: Spatial patterns and the influence of climate variability. Progress in Oceanography 146: 212 – 222. https://doi.org/10.1016/j.pocean.2016.07.007
  58. González, H.E.; Graeve, M.; Kattner, G.; Silva, N.; Castro, L.; Iriarte, J.L.; Osmán, L.; Daneri, G.; Vargas, C.A. (2016) Carbon flow through the pelagic food web in southern Chilean Patagonia: relevance of Euphausia vallentini as a key species. Marine Ecology Progress Series 557, 91 – 110. https://doi.org/10.3354/meps11826
  59. Lønborg, C.; Cuevas, L.A.; Reinthaler. T.; Herndl, G.J.; Gasol, J.M.; Morán. X.A.G.; Bates, N.R.; Álvarez-Salgado, X.A. (2016) Temperature dependence of ocean heterotrophic prokaryotic production. Frontiers in Aquatic Microbiology 3:90. https://doi.org/10.3389/fmars.2016.00090
  60. Duarte C.; Navarro, J.M., Acuña, K.; Torres, R.; Manriquez, P.H.; Lardies, M.A.; Vargas, C.A.; Lagos, N.A. & Aguilera V. (2015) Intraspecific variability in the response of the edible mussel Mytilus chilensis (Hupe) to Ocean Acidification. Estuarine & Coasts 38: 590-598. https://doi.org/10.1007/s12237-014-9845-y
  61. Vargas, C.A.; Aguilera, V.M.; San Martín, V.; Manríquez, P.H.; Navarro, J.M.; Duarte, C.; Torres, R.; Lardies, M.A. & Lagos, N.A. (2015) CO2-Driven Ocean Acidification Disrupts the Filter Feeding Behavior in Chilean Gastropod and Bivalve Species from Different Geographic Localities. Estuarine & Coasts 38: 1163 – 1177. https://doi.org/10.1007/s12237-014-9873-7
  62. Pérez, C.A.; DeGrandpre, M.D.; Lagos, N.A.; Saldías, G.S.; Cascales, E.-K. & Vargas, C.A. (2015) Influence of climate and land use in carbon biogeochemistry in lower reaches of rivers in central southern Chile: Implications for the carbonate system in river-influenced rockyshore environments. Journal of Geophysical Research, Biogeosciences 120(4): 673-692.https://doi.org/10.1002/2014JG002699
  63. Duarte, C.H.; Navarro, J.M.; Acuña, K.; Torres, R.; Manríquez, P.H.; Lardies, M.; Vargas, C.A.; Lagos, N.A.; Aguilera, V. (2014) Combined effects of temperature and Ocean acidification on the juvenile individuals of the mussel Mytilus chilensis. Journal of Sea Research 85: 308-314. https://doi.org/10.1016/j.seares.2013.06.002
  64. Lardies M.A., Arias M.B., Poupin M.J., Manríquez P.H., Torres R., Vargas C.A., Navarro J.M. & Lagos N.A. (2014) Differential response to ocean acidification in physiological traits of Concholepas concholepas populations. Journal of Sea Research, 90: 127-134. https://doi.org/10.1016/j.seares.2014.03.010
  65. Manríquez, P.H.; Jara, M.E.; Mardones, M.L.; Torres, R.; Navarro, J.M.; Lardies, M.A.; Vargas, C.A.; Duarte, C.; Lagos, N.A. (2014) Ocean acidification affects predator avoidance behavior but not prey detection in the early ontogeny of a keystone species. Marine Ecology Progress Series 502: 157-167. https://doi.org/10.3354/meps10703
  66. Silva N. & Vargas, C.A. (2014) Hypoxia in Chilean Patagonian Fjords. Progress in Oceanography, 129: 62 – 74. https://doi.org/10.1016/j.pocean.2014.05.016
  67. Lafon, A.; Silva, N.; Vargas, C.A. (2014) Contribution of allochthonous organic carbon across the Serrano River Basin and the adjacent fjord system in Southern Chilean Patagonia: insights from the combined use of stable isotope and fatty acid biomarkers. Progress in Oceanography. 129: 98 – 113. https://doi.org/10.1016/j.pocean.2014.03.004
  68. Manríquez, P.H.; Jara, M.E.; Mardones, M.L.; Torres, R.; Lagos, N.A.; Lardies, M.A. Vargas, C.A.; Duarte, C. & Navarro, J.M. (2014) Effects of ocean acidification on developing and early post hatching larval traits of Concholepas concholepas (loco). Marine Ecology Progress Series 514: 87-103. https://doi.org/10.3354/meps10951
  69. Navarro, J.M.; Torres, R.; Acuña, K.; Duarte, C.; Manríquez, P.H.; Lardies, M.; Lagos, N.A.; Vargas, C.A.; Aguilera, V. (2013) Impact of medium-term exposure to elevated pCO2 levels on the physiological energetics of the mussel Mytilus chilensis. Chemosphere 90: 1242–1248. https://doi.org/10.1016/j.chemosphere.2012.09.063
  70. Vargas, C.A.; Arriagada, N.L.; Sobarzo, M.; Contreras, P.Y.; Saldías, G. (2013) Bacterial production across a river to ocean continuum in Central Chile: Implications for organic carbon cycling. Aquatic Microbial Ecology 68: 195–213. https://doi.org/10.3354/ame01608
  71. Aguilera, V.M.; Vargas, C.A.; Manríquez, P.H.; Navarro, J.M.; Duarte, C. (2013) Low-pH Freshwater Discharges Drive Spatial and Temporal Variations in Life History Traits of Neritic Copepod Acartia tonsa. Estuaries and Coasts 36: 1084 – 1092. https://doi.org/10.1007/s12237-013-9615-2
  72. Vargas, C.A.; De La Hoz, M.; Aguilera, V.; San Martin, V.; Manríquez, P.H.; Navarro, J.M.; Torres, R.; Lardies, M.A.; Lagos, N. (2013) CO2-driven ocean acidification reduces larval feeding efficiency and change food selectivity in the mollusk Concholepas concholepas. Journal of Plankton Research 35(5): 1059 – 1068. https://doi.org/10.1093/plankt/fbt045
  73. Manríquez, P.H.; Jara, M.E.; Mardones, L.; Navarro, J.M.; Torres, R.; Lardies, M.A.; Vargas, C.A. Duarte, C.; Widdicombe, S.; Salisbury, J.; Lagos, N.A. (2013) Ocean acidification affects prey-predator interactions but not net prey shell growth. PLoS ONE 8(7): e68643. https://doi.org/10.1371/journal.pone.0068643
  74. González, H.E.; Castro, L.; Daneri, G.; Iriarte, J.L.; Silva, N.; Tapia, F.; Teca, E.; Vargas, C.A. (2013) Land-ocean gradient in haline stratification and its effects on plankton dynamics and trophic carbon fluxes in Chilean Patagonian fjords (47° – 50°S). Progress in Oceanograph 119: 32 – 47.
  75. Torres, R.; Manríquez, P.H.; Duarte, C.; Navarro, J.M.; Lagos, N.A.; Vargas, C.A. & Lardies, M.A. (2013) Evaluation of  a semi-automatic system for long-term seawater carbonate chemistry manipulation. Revista Chilena de Historia Natural 86: 443 – 451.
  76. Iriarte, J.L.¸Vargas, C.A.; Bermúdez, R.; Urrutia, R.E.; Tapia, F.J. (2012) Primary production and plankton carbon biomass in a river-influenced upwelling area off Concepción, Chile. Progress in Oceanography 92(1): 97-109
  77. Vargas, C.A.; Contreras, P.Y.; Iriarte J.L. (2012) Relative importance of phototrophic, heterotrophic, and mixotrophic nanoflagellates in the microbial food web dynamic of a river-influenced coastal upwelling area. Aquatic Microbial Ecology 65: 233 – 248.
  78. Léniz, B.; Vargas, C.A.; Ahumada, R. (2012) Characterization and comparison of microphytoplankton biomass in the lower reaches of the Biobío River and the adjacent coastal area off Central Chile during autumn-winter conditions. Latin American Journal of Aquatic Research 40(4) 847 – 857.
  79. Vargas, C.A.; Martínez, R.A.; San Martín, V.; Aguayo, M.; Silva, N.; Torres, R. (2011) Allocthonous subsidies of organic matter across a lake-river-fjord landscape in the Chilean Patagonia: Implications for marine plankton food webs. Continental Shelf Research, 31: 187 – 201
  80. Czypionka, T.; Vargas C.A.; Silva, N.; Daneri, G.; González, H.E.; Iriarte, J.L. (2010) Importance of mixotrophic nanoplankton in the fjord region of southern Chile. Continental Shelf Research, 31: 216 – 224
  81. González, H.E.; Castro, L.; Daneri, G.; Iriarte, J.L.; Silva, N.; Vargas, C.A.; Giesecke, R.; Sánchez, N. (2011) Seasonal plankton variability in Chilean Patagonia Fjords: carbon flow through the pelagic food web of the Aysen Fjord and plankton dynamics in the Moraleda Channel basin. Continental Shelf Research, 31: 225 – 243
  82. Silva, N.; Vargas, C.A.; Prego, R. (2011) Land-ocean distribution of allochthonous organic matter in the surface sediments of the Chiloé and Aysén interior seas (Chilean Northern Patagonia). Continental Shelf Research, 31: 330 – 339
  83. González, H.E.; Calderón, M.J.; Castro, L.; Clement A.; Cuevas, L.A.; Daneri, G.; Iriarte, J.L.; Lizárraga, L.; Martínez, R.; Menschel, E.; Silva, N.; Carrasco, C.; Valenzuela, C.; Vargas, C.A. & Molinet C. (2010) Primary production and plankton dynamics in the Reloncaví Fjord and the Interior Sea of Chiloé, Northern Patagonia, Chile. Marine Ecology Progress Series 402: 13 – 30.
  84. Vargas, C.A.; Martínez, R.A.; Escribano, R.; & Lagos N.A. (2010) The relative influence of food quantity, quality, and selectivity on zooplankton growth regulation in coastal food webs. Journal of Marine Biological Association of United Kingdom 90(6): 1189 – 1201.
  85. Vargas, C.A. & Martínez, R.A. (2009) Grazing impact in natural populations of ciliates and dinoflagellates over a river-influenced continental shelf. Aquatic Microbial Ecology 56: 93 – 108 
  86. Vargas, C.A.; R.A. Martínez & H. E. González (2008) Contrasting trophic interactions in microbial and copepods communities in a fjord ecosystem (Chilean Patagonia). Aquatic Microbial Ecology, 53: 227 – 242.
  87. Vargas, C.A.; Cuevas, L.A.; González, H.E. & Daneri, G. (2007) Bacterial growth response to copepod grazing in aquatic ecosystems. Journal of Marine Biological Association of United Kingdom 87: 667 – 674.
  88. Vargas, C.A.; Martínez, R.; Cuevas, L.A.; Pavez, M.A.; Cartes, C.; González, H.E.; Escribano R & Daneri, G. (2007). The relative importance of microbial and classical food webs in a highly productive coastal upwelling area. Limnology & Oceanography 52 (4): 1495 – 1510.
  89. Thiel, M.; Macaya, E.; Acuña, E.; Arntz, W.; Bastias, H.; Brokordt, K.; Camus, P.; Castilla, J.C.; Castro, L.R.; Cortés, M.; Dumont, C.P.; Escribano, R.; Fernández, M.; Lancelloti, D.; Gajardo, J.A.; Gaymer, C.F.; Gomez, I.; González, A.E.; González, H.E.; Haye, P.A.; Illanes, J.-E.;Iriarte, J.L.; Luna-Jorquera, G.; Luxoro, C.; Manr´ñiquez, P.H.; Marín, V.; Muñoz, P.; Navarrete, S.A.; Pérez, E.; Poulin, E.; Sellanes, J.; Sepúlveda, A.; Stotz, W.; Tala, F.; Thomas, A.; Vargas , C.A.; Vásquez, J.A. & Vega, A. (2007) The Humboldt Current System of Northern and Central Chile: Oceanographic Processes, Ecological Interactions and Socio-Economic Feedback. In: Oceanography and Marine Biology – An Annual Review 45: 195 – 344.
  90. Poulet, S.A.; Escribano, R.; Hidalgo, P.; Cueff, A.; Wichard, T.; Aguilera, V.; Vargas, C.A. & Pohnert, G. (2007) Collapse of Calanus chilensis reproduction in a marine environment with high diatom concentration. Journal of Experimental Biology and Ecology 352: 187 – 199.
  91. Vargas, C.A.; P. Manríquez & S.A. Navarrete (2006) Feeding by larvae of intertidal invertebrates: assessing their position in pelagic trophic webs. ECOLOGY 87 (2): 444 – 457.
  92. Narváez D.; S.A. Navarrete; J Largier & Vargas, C.A (2006) Onshore advection of warm water and larval invertebrate settlement during relaxation of upwelling off central Chile. Marine Ecology Progress Series 309: 159 – 173.
  93. Vargas, C.A.; D. Narváez; Piñones A.; S.A. Navarrete & N. Lagos (2006) Larval transport of barnacles influenced by the dynamic of a river plume. Journal of Marine Biological Association of United Kingdom 86: 1057 – 1065.
  94. Vargas, C.A.; Escribano, R. & Poulet, S. (2006) Phytoplankton diversity determines time-windows for successful zooplankton reproductive pulses. ECOLOGY 87 (12): 2992 – 2999. 
  95. Piñones, A.; A. Valle-Levinson; D. Narváez; C.A. Vargas; S. Navarrete & J. C. Castilla (2005) Wind-induced diurnal variability in river plume motion. Estuarine, Coastal & Shelf Science, 65: 513-525.
  96. Tönnesson, K.; M. Maar; C.A. Vargas; E.F. Møller; S. Satapoomin; S. Zervoudaki; E. Christou; A. Giannakourou; A. Sell; J.K. Petersen; T.G. Nielsen & P. Tiselius (2005) Grazing impact of Oikopleura dioica and copepods on an autumn plankton community. Marine Biology Research 1 (5): 365 – 373.
  97. Vargas, C.A.; D. Narváez; A. Piñones, R. Venegas & S.A. Navarrete (2004) Internal tidal bore warm fronts and settlement of invertebrates in central Chile. Estuarine, Coastal & Shelf Science, 61: 603 – 612
  98. Vargas, C.A. & H. González (2004) Plankton Community Structure and Carbon Cycling in a Coastal Upwelling System (I): Contribution of Bacteria, Ciliated Microprotozoans and Dinoflagellates to the diet of Copepods and Appendicularians. Aquatic Microbial Ecology 34: 151 – 164
  99. Vargas, C.A. & H. González (2004) Plankton Community Structure and Carbon Cycling in a Coastal Upwelling System (II): Microheterotrophic pathway. Aquatic Microbial Ecology 34: 165 – 180
  100. González, H.E.; R. Giesecke; C.A. Vargas; M. Pavéz; J.L. Iriarte; P. Santibañez; L. Castro; R. Escribano & F. Pagés (2004) Carbon cycling through the pelagic food web in the northern Humboldt Current off Chile (23 °S). ICES Journal of Marine Science 61 (4): 572 – 584
  101. Vargas, C.A. & L.P. Madin (2004) Zooplankton feeding ecology: Clearance and ingestion rates of the salps Thalia democratica, Salpa cylindrica and Cyclosalpa affinis on naturally occurring particles in the Mid-Atlantic Bight. Journal of Plankton Research 26 (7): 827 – 833
  102. Vargas, C.A.; S. Araneda & G. Valenzuela (2003) Influence of tidal phase and circulation on larval fish distribution in a partially mixed estuary, Corral Bay, Chile. Journal of the Marine Biological Association of the United Kingdom 83: 217 – 222
  103. Tiselius, P.; J.K. Petersen; T.G. Nielsen; M. Maar; E.F. Møller; S. Satapoomin; K Tönnesson; T Zervoudaki; E. Christou; A. Giannakourou; A. Sell & Vargas, C.A. (2003). Functional response of Oikopleura dioica and house clogging due to exposure to algae of different size. Marine Biology 142: 253 – 261
  104. Valenzuela, G. & Vargas, C.A. (2002) Comparative larval growth rate of Sprattus sprattus in relation to biological and oceanographic features in the North Sea. Archive of Fisheries and Marine Research 49 (3): 213 – 230
  105. Vargas, C.A.; K. Tönnesson; M. Maar; E.F. Møller; S. Satapoomin; T. Zervoudaki; E. Christou; A. Giannakourou; A. Sell & P. Tiselius (2002) Importance of copepods versus appendicularians in vertical carbon fluxes in a Swedish fjord. Marine Ecology Progress Series 241: 125 – 138
  106. Vargas, C.A. & L. Castro (2001) Spawning of the Chilean hake (Merluccius gayi gayi) in the upwelling system off central-southern Chile in relation to oceanographic and biological features. Scientia Marina 65 (2): 101 – 110
  107. Vargas, C.A.; G. Valenzuela; S. Núñez & D. F. Arcos (1997) Role of oceanographic and topographic factors in the retention of hake (Merluccius gayi gayi  Guichenot 1848) larvae in the upwelling system off central-southern Chile. Archive of Fisheries and Marine Research 45 (3): 201 – 222
  108. Vargas, C.A.; G. Valenzuela; S. Núñez & D. F. Arcos (1996) Natural mortality of hake larvae (Merluccius gayi gayi) off Central-southern Chile in relation to their spatial distribution and patchiness. Investigaciones Marinas, 24: 19 – 30